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HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102038424, updated on 10-Mar-2024

Summary

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Gene symbol
HERC4
Gene description
HECT and RLD domain containing E3 ubiquitin protein ligase 4
See related
Ensembl:ENSGFOG00000002671
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054488.1 (1224526..1253873, complement)

NW_005054488.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C12 Neighboring gene sirtuin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054488 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable E3 ubiquitin-protein ligase HERC4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054488.1 Reference GeoFor_1.0

    Range
    1224526..1253873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005428501.3 → XP_005428558.1  probable E3 ubiquitin-protein ligase HERC4 isoform X1

    UniProtKB/TrEMBL
    A0A6I9HT73
    Related
    ENSGFOP00000003768.1, ENSGFOT00000003863.1
    Conserved Domains (2) summary
    COG5184
    Location:2 → 344
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    cd00078
    Location:708 → 1054
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  2. XM_031063221.1 → XP_030919081.1  probable E3 ubiquitin-protein ligase HERC4 isoform X1

    UniProtKB/TrEMBL
    A0A6I9HT73
    Conserved Domains (2) summary
    COG5184
    Location:2 → 344
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    cd00078
    Location:708 → 1054
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  3. XM_031063223.1 → XP_030919083.1  probable E3 ubiquitin-protein ligase HERC4 isoform X2

    UniProtKB/TrEMBL
    A0A8N5EWR3
    Related
    ENSGFOP00000003813.1, ENSGFOT00000003909.1
    Conserved Domains (2) summary
    COG5184
    Location:2 → 344
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    cd00078
    Location:700 → 1046
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  4. XM_031063222.1 → XP_030919082.1  probable E3 ubiquitin-protein ligase HERC4 isoform X1

    UniProtKB/TrEMBL
    A0A6I9HT73
    Conserved Domains (2) summary
    COG5184
    Location:2 → 344
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    cd00078
    Location:708 → 1054
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
Nucleotide Protein
Heading Accession and Version

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