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VPS13C vacuolar protein sorting 13 homolog C [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102036045, updated on 10-Mar-2024

Summary

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Gene symbol
VPS13C
Gene description
vacuolar protein sorting 13 homolog C
See related
Ensembl:ENSGFOG00000009086
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
81
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054398.1 (1089666..1158693, complement)

NW_005054398.1Genomic Context describing neighboring genes Neighboring gene interactor of little elongation complex ELL subunit 2 Neighboring gene RAR related orphan receptor A Neighboring gene C2 calcium-dependent domain-containing protein 4C-like Neighboring gene talin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054398 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mitochondrion organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein retention in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 13C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054398.1 Reference GeoFor_1.0

    Range
    1089666..1158693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031061002.1 → XP_030916862.1  vacuolar protein sorting-associated protein 13C isoform X1

    UniProtKB/TrEMBL
    A0A8N5EU35
    Related
    ENSGFOP00000013782.1, ENSGFOT00000014238.1
    Conserved Domains (5) summary
    COG5043
    Location:2973 → 3428
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    pfam06650
    Location:2550 → 2804
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam16908
    Location:1 → 194
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:3112 → 3288
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
    pfam16910
    Location:395 → 617
    VPS13_mid_rpt; Repeating coiled region of VPS13

  2. XM_031061003.1 → XP_030916863.1  vacuolar protein sorting-associated protein 13C isoform X2

    UniProtKB/TrEMBL
    A0A8N5ESJ8
    Related
    ENSGFOP00000013812.1, ENSGFOT00000014268.1
    Conserved Domains (5) summary
    COG5043
    Location:1 → 1168
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    pfam06650
    Location:2550 → 2804
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam16908
    Location:1 → 194
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:3112 → 3288
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
    pfam16910
    Location:395 → 617
    VPS13_mid_rpt; Repeating coiled region of VPS13
Nucleotide Protein
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