U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

FRAS1 Fraser extracellular matrix complex subunit 1 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102033074, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
FRAS1
Gene description
Fraser extracellular matrix complex subunit 1
See related
Ensembl:ENSGFOG00000008959
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See FRAS1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
74
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054520.1 (237480..341602, complement)

NW_005054520.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly protein COX18, mitochondrial Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 3 Neighboring gene mitochondrial ribosomal protein L1 Neighboring gene CCR4-NOT transcription complex subunit 6 like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005054520 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: extracellular matrix protein FRAS1
Names
Fraser syndrome 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054520.1 Reference GeoFor_1.0

    Range
    237480..341602 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031063660.1 → XP_030919520.1  LOW QUALITY PROTEIN: extracellular matrix protein FRAS1

    UniProtKB/TrEMBL
    A0A8N5I3T2
    Related
    ENSGFOP00000013135.1, ENSGFOT00000013569.1
    Conserved Domains (8) summary
    pfam03302
    Location:540 → 899
    VSP; Giardia variant-specific surface protein
    smart00261
    Location:1021 → 1062
    FU; Furin-like repeats
    TIGR00845
    Location:2468 → 2716
    caca; sodium/calcium exchanger 1
    pfam00093
    Location:146 → 203
    VWC; von Willebrand factor type C domain
    cl17735
    Location:272 → 329
    VWC; von Willebrand factor type C domain
    pfam00757
    Location:924 → 1030
    Furin-like; Furin-like cysteine rich region
    pfam16184
    Location:2211 → 2321
    Cadherin_3; Cadherin-like
    cl02522
    Location:2952 → 3046
    Calx-beta; Calx-beta domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.