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ESR1 estrogen receptor 1 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102032661, updated on 10-Mar-2024

Summary

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Gene symbol
ESR1
Gene description
estrogen receptor 1
See related
Ensembl:ENSGFOG00000004320
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054316.1 (9054125..9155282, complement)

NW_005054316.1Genomic Context describing neighboring genes Neighboring gene MYC target 1 Neighboring gene spectrin repeat containing nuclear envelope protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054316 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear estrogen receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in steroid hormone mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
estrogen receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054316.1 Reference GeoFor_1.0

    Range
    9054125..9155282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005420121.2 → XP_005420178.1  estrogen receptor

    UniProtKB/TrEMBL
    A0A6I9HFX3
    Related
    ENSGFOP00000006150.1, ENSGFOT00000006330.1
    Conserved Domains (4) summary
    cd06949
    Location:302 → 539
    NR_LBD_ER; Ligand binding domain of Estrogen receptor, which are activated by the hormone 17beta-estradiol (estrogen)
    cd07171
    Location:172 → 253
    NR_DBD_ER; DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers
    pfam02159
    Location:40 → 173
    Oest_recep; Oestrogen receptor
    pfam12743
    Location:544 → 587
    ESR1_C; Oestrogen-type nuclear receptor final C-terminal
Nucleotide Protein
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