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Foxa2 forkhead box A2 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102028742, updated on 10-Mar-2024

Summary

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Gene symbol
Foxa2
Gene description
forkhead box A2
See related
Ensembl:ENSCLAG00000014548
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955415.1 (29982940..29987093, complement)

NW_004955415.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102025352 Neighboring gene uncharacterized LOC102025784 Neighboring gene thrombomodulin Neighboring gene CD93 molecule

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955415.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hepatocyte nuclear factor 3-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955415.1 Reference ChiLan1.0 Primary Assembly

    Range
    29982940..29987093 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005380958.2 → XP_005381015.1  hepatocyte nuclear factor 3-beta isoform X2

    Conserved Domains (3) summary
    smart00339
    Location:159 → 247
    FH; FORKHEAD
    pfam08430
    Location:17 → 158
    Forkhead_N; Forkhead N-terminal region
    pfam09354
    Location:370 → 443
    HNF_C; HNF3 C-terminal domain

  2. XM_005380957.2 → XP_005381014.1  hepatocyte nuclear factor 3-beta isoform X1

    UniProtKB/TrEMBL
    A0A8C2VZY1
    Related
    ENSCLAP00000021238.1, ENSCLAT00000021439.1
    Conserved Domains (3) summary
    smart00339
    Location:165 → 253
    FH; FORKHEAD
    pfam08430
    Location:23 → 164
    Forkhead_N; Forkhead N-terminal region
    pfam09354
    Location:376 → 449
    HNF_C; HNF3 C-terminal domain
Nucleotide Protein
Heading Accession and Version

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