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Rxrb retinoid X receptor beta [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102028128, updated on 10-Mar-2024

Summary

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Gene symbol
Rxrb
Gene description
retinoid X receptor beta
See related
Ensembl:ENSCLAG00000013699
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955437.1 (1767833..1774401, complement)

NW_004955437.1Genomic Context describing neighboring genes Neighboring gene HLA class II histocompatibility antigen, DP alpha 1 chain Neighboring gene HLA class II histocompatibility antigen, DP beta 1 chain Neighboring gene collagen type XI alpha 2 chain Neighboring gene translation initiation factor IF-2-like Neighboring gene solute carrier family 39 member 7 Neighboring gene hydroxysteroid 17-beta dehydrogenase 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955437.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to retinoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor RXR-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955437.1 Reference ChiLan1.0 Primary Assembly

    Range
    1767833..1774401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005389474.2 → XP_005389531.1  retinoic acid receptor RXR-beta isoform X1

    Conserved Domains (3) summary
    cd06943
    Location:296 → 513
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:202 → 277
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:133 → 187
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  2. XM_005389475.2 → XP_005389532.1  retinoic acid receptor RXR-beta isoform X2

    Conserved Domains (3) summary
    cd06943
    Location:296 → 509
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:202 → 277
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:133 → 187
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  3. XM_005389477.2 → XP_005389534.1  retinoic acid receptor RXR-beta isoform X3

    UniProtKB/TrEMBL
    A0A8C2VWR4
    Related
    ENSCLAP00000019990.1, ENSCLAT00000020183.1
    Conserved Domains (3) summary
    cd06943
    Location:175 → 392
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:81 → 156
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:12 → 66
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
Nucleotide Protein
Heading Accession and Version

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