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Rad18 RAD18 E3 ubiquitin protein ligase [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102027580, updated on 10-Mar-2024

Summary

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Gene symbol
Rad18
Gene description
RAD18 E3 ubiquitin protein ligase
See related
Ensembl:ENSCLAG00000003652
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955561.1 (463586..602354, complement)

NW_004955561.1Genomic Context describing neighboring genes Neighboring gene geranylgeranyl transferase type-1 subunit beta pseudogene Neighboring gene caveolin 3 Neighboring gene oxytocin receptor Neighboring gene SLIT-ROBO Rho GTPase activating protein 3 Neighboring gene uncharacterized LOC102022432 Neighboring gene THUMP domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955561.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in postreplication repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein monoubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Rad6-Rad18 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RAD18
Names
RAD18 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955561.1 Reference ChiLan1.0 Primary Assembly

    Range
    463586..602354 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013509105.1 → XP_013364559.1  E3 ubiquitin-protein ligase RAD18 isoform X1

    UniProtKB/TrEMBL
    A0A8C2UTN7
    Conserved Domains (4) summary
    smart00734
    Location:200 → 223
    ZnF_Rad18; Rad18-like CCHC zinc finger
    cd00162
    Location:25 → 63
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    TIGR00599
    Location:13 → 362
    rad18; DNA repair protein rad18
    pfam02037
    Location:247 → 281
    SAP; SAP domain

  2. XM_013509107.1 → XP_013364561.1  E3 ubiquitin-protein ligase RAD18 isoform X1

    UniProtKB/TrEMBL
    A0A8C2UTN7
    Conserved Domains (4) summary
    smart00734
    Location:200 → 223
    ZnF_Rad18; Rad18-like CCHC zinc finger
    cd00162
    Location:25 → 63
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    TIGR00599
    Location:13 → 362
    rad18; DNA repair protein rad18
    pfam02037
    Location:247 → 281
    SAP; SAP domain

  3. XM_013509108.1 → XP_013364562.1  E3 ubiquitin-protein ligase RAD18 isoform X2

    Conserved Domains (4) summary
    smart00734
    Location:200 → 223
    ZnF_Rad18; Rad18-like CCHC zinc finger
    cd00162
    Location:25 → 63
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    TIGR00599
    Location:13 → 362
    rad18; DNA repair protein rad18
    pfam02037
    Location:247 → 281
    SAP; SAP domain

  4. XM_013509104.1 → XP_013364558.1  E3 ubiquitin-protein ligase RAD18 isoform X1

    UniProtKB/TrEMBL
    A0A8C2UTN7
    Conserved Domains (4) summary
    smart00734
    Location:200 → 223
    ZnF_Rad18; Rad18-like CCHC zinc finger
    cd00162
    Location:25 → 63
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    TIGR00599
    Location:13 → 362
    rad18; DNA repair protein rad18
    pfam02037
    Location:247 → 281
    SAP; SAP domain

  5. XM_013509106.1 → XP_013364560.1  E3 ubiquitin-protein ligase RAD18 isoform X1

    UniProtKB/TrEMBL
    A0A8C2UTN7
    Related
    ENSCLAP00000005145.1, ENSCLAT00000005239.1
    Conserved Domains (4) summary
    smart00734
    Location:200 → 223
    ZnF_Rad18; Rad18-like CCHC zinc finger
    cd00162
    Location:25 → 63
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    TIGR00599
    Location:13 → 362
    rad18; DNA repair protein rad18
    pfam02037
    Location:247 → 281
    SAP; SAP domain

  6. XM_013509110.1 → XP_013364564.1  E3 ubiquitin-protein ligase RAD18 isoform X3

    Conserved Domains (4) summary
    smart00734
    Location:200 → 223
    ZnF_Rad18; Rad18-like CCHC zinc finger
    cd00162
    Location:25 → 63
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    TIGR00599
    Location:13 → 362
    rad18; DNA repair protein rad18
    pfam02037
    Location:247 → 281
    SAP; SAP domain
Nucleotide Protein
Heading Accession and Version

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