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Six6 SIX homeobox 6 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102020896, updated on 10-Mar-2024

Summary

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Gene symbol
Six6
Gene description
SIX homeobox 6
See related
Ensembl:ENSCLAG00000003715
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955466.1 (9120227..9122109, complement)

NW_004955466.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene SIX homeobox 1 Neighboring gene chromosome unknown C14orf39 homolog Neighboring gene cyclin-G1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955466.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein SIX6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955466.1 Reference ChiLan1.0 Primary Assembly

    Range
    9120227..9122109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013521887.1 → XP_013377341.1  homeobox protein SIX6

    UniProtKB/TrEMBL
    A0A8C2UU16
    Related
    ENSCLAP00000005232.1, ENSCLAT00000005328.1
    Conserved Domains (2) summary
    cd00086
    Location:130 → 178
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam16878
    Location:9 → 122
    SIX1_SD; Transcriptional regulator, SIX1, N-terminal SD domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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