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Chrna5 cholinergic receptor nicotinic alpha 5 subunit [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102012488, updated on 10-Mar-2024

Summary

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Gene symbol
Chrna5
Gene description
cholinergic receptor nicotinic alpha 5 subunit
See related
Ensembl:ENSCLAG00000006664
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955450.1 (945400..974129)

NW_004955450.1Genomic Context describing neighboring genes Neighboring gene hydroxylysine kinase Neighboring gene proteasome 20S subunit alpha 4 Neighboring gene uncharacterized LOC102012261 Neighboring gene cholinergic receptor nicotinic alpha 3 subunit Neighboring gene cholinergic receptor nicotinic beta 4 subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955450.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuronal acetylcholine receptor subunit alpha-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955450.1 Reference ChiLan1.0 Primary Assembly

    Range
    945400..974129
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013518825.1 → XP_013374279.1  neuronal acetylcholine receptor subunit alpha-5 isoform X4

    Conserved Domains (2) summary
    pfam02931
    Location:74 → 277
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:284 → 394
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  2. XM_005393456.2 → XP_005393513.1  neuronal acetylcholine receptor subunit alpha-5 isoform X1

    Conserved Domains (3) summary
    TIGR00860
    Location:74 → 476
    LIC; Cation transporter family protein
    pfam02931
    Location:74 → 277
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:284 → 474
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  3. XM_005393457.1 → XP_005393514.1  neuronal acetylcholine receptor subunit alpha-5 isoform X2

    UniProtKB/TrEMBL
    A0A8C2V364
    Related
    ENSCLAP00000009609.1, ENSCLAT00000009738.1
    Conserved Domains (3) summary
    TIGR00860
    Location:49 → 451
    LIC; Cation transporter family protein
    pfam02931
    Location:49 → 252
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:259 → 449
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  4. XM_013518824.1 → XP_013374278.1  neuronal acetylcholine receptor subunit alpha-5 isoform X3

    Conserved Domains (3) summary
    TIGR00860
    Location:24 → 426
    LIC; Cation transporter family protein
    pfam02931
    Location:24 → 227
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:234 → 424
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region
Nucleotide Protein
Heading Accession and Version

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