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Usp38 ubiquitin specific peptidase 38 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102009595, updated on 10-Mar-2024

Summary

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Gene symbol
Usp38
Gene description
ubiquitin specific peptidase 38
See related
Ensembl:ENSCLAG00000014109
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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See Usp38 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955471.1 (316319..350982, complement)

NW_004955471.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102009168 Neighboring gene uncharacterized LOC102009373 Neighboring gene uncharacterized LOC102010146 Neighboring gene uncharacterized LOC102009935

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955471.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 38

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955471.1 Reference ChiLan1.0 Primary Assembly

    Range
    316319..350982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005400854.2 → XP_005400911.1  ubiquitin carboxyl-terminal hydrolase 38

    UniProtKB/TrEMBL
    A0A8C2YSR6
    Related
    ENSCLAP00000020598.1, ENSCLAT00000020796.1
    Conserved Domains (2) summary
    cd02664
    Location:446 → 945
    Peptidase_C19H; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:445 → 944
    UCH; Ubiquitin carboxyl-terminal hydrolase
Nucleotide Protein
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