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Sptssb serine palmitoyltransferase small subunit B [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102008362, updated on 10-Mar-2024

Summary

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Gene symbol
Sptssb
Gene description
serine palmitoyltransferase small subunit B
See related
Ensembl:ENSCLAG00000003010
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955448.1 (11756766..11791418, complement)

NW_004955448.1Genomic Context describing neighboring genes Neighboring gene nucleolar protein 56-like Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) Neighboring gene NMD3 ribosome export adaptor Neighboring gene WD40 repeat-containing protein SMU1 pseudogene Neighboring gene uncharacterized LOC106149516 Neighboring gene otolin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955448.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine C-palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase small subunit B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955448.1 Reference ChiLan1.0 Primary Assembly

    Range
    11756766..11791418 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005393134.2 → XP_005393191.1  serine palmitoyltransferase small subunit B

    See identical proteins and their annotated locations for XP_005393191.1

    UniProtKB/TrEMBL
    A0A8C2URP5
    Related
    ENSCLAP00000004221.1, ENSCLAT00000004303.1
    Conserved Domains (1) summary
    pfam11779
    Location:7 → 59
    DUF3317; Protein of unknown function (DUF3317)
Nucleotide Protein
Heading Accession and Version

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