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Lgi1 leucine rich glioma inactivated 1 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102003163, updated on 10-Mar-2024

Summary

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Gene symbol
Lgi1
Gene description
leucine rich glioma inactivated 1
See related
Ensembl:ENSCLAG00000003762
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955507.1 (268032..304949)

NW_004955507.1Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 6C Neighboring gene fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1 Neighboring gene CAP-Gly domain-containing linker protein 1 pseudogene Neighboring gene solute carrier family 35 member G1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955507.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich glioma-inactivated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955507.1 Reference ChiLan1.0 Primary Assembly

    Range
    268032..304949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005407523.1 → XP_005407580.1  leucine-rich glioma-inactivated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2UU02
    Related
    ENSCLAP00000005301.1, ENSCLAT00000005397.1
    Conserved Domains (6) summary
    smart00082
    Location:226 → 274
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:71 → 92
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:156 → 195
    LRR_RI; leucine-rich repeat [structural motif]
    pfam03736
    Location:563 → 603
    EPTP; EPTP domain
    pfam12799
    Location:91 → 131
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:71 → 127
    LRR_8; Leucine rich repeat

  2. XM_005407524.2 → XP_005407581.1  leucine-rich glioma-inactivated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2USW0, A0A8C2YKG4
    Related
    ENSCLAP00000005299.1, ENSCLAT00000005395.1
    Conserved Domains (5) summary
    smart00082
    Location:173 → 221
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:71 → 92
    LRR_1; leucine-rich repeat [structural motif]
    pfam03736
    Location:510 → 550
    EPTP; EPTP domain
    pfam12799
    Location:115 → 155
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:91 → 151
    LRR_8; Leucine rich repeat

  3. XM_013506244.1 → XP_013361698.1  leucine-rich glioma-inactivated protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C2USS2, A0A8C2YKG4
    Related
    ENSCLAP00000005300.1, ENSCLAT00000005396.1
    Conserved Domains (5) summary
    smart00370
    Location:91 → 113
    LRR; Leucine-rich repeats, outliers
    smart00082
    Location:125 → 173
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:93 → 116
    LRR_1; leucine-rich repeat [structural motif]
    pfam03736
    Location:462 → 502
    EPTP; EPTP domain
    pfam13855
    Location:71 → 127
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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