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Tspan4 tetraspanin 4 [ Microtus ochrogaster (prairie vole) ]

Gene ID: 102002463, updated on 10-Mar-2024

Summary

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Gene symbol
Tspan4
Gene description
tetraspanin 4
See related
Ensembl:ENSMOCG00000000966
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus ochrogaster
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
102 current MicOch1.0 (GCF_000317375.1) 8 NC_022015.1 (34195605..34215777)

Chromosome 8 - NC_022015.1Genomic Context describing neighboring genes Neighboring gene CD151 molecule (Raph blood group) Neighboring gene RNA polymerase II, I and III subunit L Neighboring gene chitinase domain containing 1 Neighboring gene adaptor related protein complex 2 subunit alpha 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_022015.1 Chromosome 8 Reference MicOch1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetraspanin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microtus ochrogaster Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MicOch1.0

Genomic

  1. NC_022015.1 Reference MicOch1.0

    Range
    34195605..34215777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005351530.2 → XP_005351587.1  tetraspanin-4 isoform X3

    See identical proteins and their annotated locations for XP_005351587.1

    Conserved Domains (2) summary
    cd03165
    Location:105 → 202
    NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...
    pfam00335
    Location:9 → 226
    Tetraspannin; Tetraspanin family

  2. XM_013347965.2 → XP_013203419.1  tetraspanin-4 isoform X4

    Conserved Domains (1) summary
    cd03165
    Location:41 → 138
    NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...

  3. XM_026781125.1 → XP_026636926.1  tetraspanin-4 isoform X3

    Conserved Domains (2) summary
    cd03165
    Location:105 → 202
    NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...
    pfam00335
    Location:9 → 226
    Tetraspannin; Tetraspanin family

  4. XM_005351531.2 → XP_005351588.1  tetraspanin-4 isoform X3

    See identical proteins and their annotated locations for XP_005351588.1

    Conserved Domains (2) summary
    cd03165
    Location:105 → 202
    NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...
    pfam00335
    Location:9 → 226
    Tetraspannin; Tetraspanin family

  5. XM_026781123.1 → XP_026636924.1  tetraspanin-4 isoform X2

    Conserved Domains (1) summary
    cd03165
    Location:200 → 282
    NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...

  6. XM_005351529.2 → XP_005351586.1  tetraspanin-4 isoform X1

    Conserved Domains (2) summary
    cd03165
    Location:200 → 297
    NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...
    pfam00335
    Location:104 → 325
    Tetraspannin; Tetraspanin family

  7. XM_026781124.1 → XP_026636925.1  tetraspanin-4 isoform X3

    Related
    ENSMOCP00000001273.1, ENSMOCT00000001310.1
    Conserved Domains (2) summary
    cd03165
    Location:105 → 202
    NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...
    pfam00335
    Location:9 → 226
    Tetraspannin; Tetraspanin family
Nucleotide Protein
Heading Accession and Version

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