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Pbx1 PBX homeobox 1 [ Microtus ochrogaster (prairie vole) ]

Gene ID: 101998012, updated on 8-Mar-2024

Summary

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Gene symbol
Pbx1
Gene description
PBX homeobox 1
See related
Ensembl:ENSMOCG00000007625
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus ochrogaster
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
Orthologs
human mouse all
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Genomic context

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See Pbx1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current MicOch1.0 (GCF_000317375.1) Unplaced Scaffold NW_004949173.1 (470045..753763, complement)

NW_004949173.1Genomic Context describing neighboring genes Neighboring gene LIM homeobox transcription factor 1 alpha Neighboring gene succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like Neighboring gene NUF2 component of NDC80 kinetochore complex

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004949173 Unplaced Scaffold Reference MicOch1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in animal organ morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-B-cell leukemia transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microtus ochrogaster Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MicOch1.0

Genomic

  1. NW_004949173.1 Reference MicOch1.0

    Range
    470045..753763 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005370336.2 → XP_005370393.1  pre-B-cell leukemia transcription factor 1 isoform X1

    See identical proteins and their annotated locations for XP_005370393.1

    Related
    ENSMOCP00000007760.1, ENSMOCT00000009845.1
    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain

  2. XM_005370338.3 → XP_005370395.1  pre-B-cell leukemia transcription factor 1 isoform X2

    See identical proteins and their annotated locations for XP_005370395.1

    Related
    ENSMOCP00000007767.1, ENSMOCT00000009854.1
    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain
Nucleotide Protein
Heading Accession and Version

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