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Tfe3 transcription factor binding to IGHM enhancer 3 [ Microtus ochrogaster (prairie vole) ]

Gene ID: 101995946, updated on 8-Mar-2024

Summary

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Gene symbol
Tfe3
Gene description
transcription factor binding to IGHM enhancer 3
See related
Ensembl:ENSMOCG00000013907
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus ochrogaster
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
10
Annotation release Status Assembly Chr Location
102 current MicOch1.0 (GCF_000317375.1) 10 NC_022016.1 (34848410..34862088)

Chromosome 10 - NC_022016.1Genomic Context describing neighboring genes Neighboring gene PRA1 domain family member 2 Neighboring gene coiled-coil domain containing 120 Neighboring gene GRIP1 associated protein 1 Neighboring gene 60S ribosomal protein L30 pseudogene Neighboring gene potassium voltage-gated channel subfamily D member 1 Neighboring gene ubiquitin-conjugating enzyme E2 S-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_022016.1 Chromosome 10 Reference MicOch1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in humoral immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of osteoclast differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor E3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microtus ochrogaster Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MicOch1.0

Genomic

  1. NC_022016.1 Reference MicOch1.0

    Range
    34848410..34862088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005352784.2 → XP_005352841.1  transcription factor E3

    UniProtKB/TrEMBL
    A0A8J6KVJ1
    Related
    ENSMOCP00000014386.1, ENSMOCT00000018145.1
    Conserved Domains (3) summary
    cd18928
    Location:337 → 427
    bHLHzip_TFE3; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor E3 (TFE3) and similar proteins
    pfam11851
    Location:432 → 572
    DUF3371; Domain of unknown function (DUF3371)
    pfam15951
    Location:113 → 266
    MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus
Nucleotide Protein
Heading Accession and Version

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