U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Trim23 tripartite motif containing 23 [ Microtus ochrogaster (prairie vole) ]

Gene ID: 101993666, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Trim23
Gene description
tripartite motif containing 23
See related
Ensembl:ENSMOCG00000018771
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus ochrogaster
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current MicOch1.0 (GCF_000317375.1) Unplaced Scaffold NW_004949109.1 (3804228..3834433)

NW_004949109.1Genomic Context describing neighboring genes Neighboring gene small glutamine rich tetratricopeptide repeat co-chaperone beta Neighboring gene trafficking protein particle complex subunit 13 Neighboring gene shieldin complex subunit 3-like Neighboring gene peptidylprolyl isomerase domain and WD repeat containing 1 Neighboring gene centromere protein K

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_004949109 Unplaced Scaffold Reference MicOch1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin-protein ligase TRIM23

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Microtus ochrogaster Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MicOch1.0

Genomic

  1. NW_004949109.1 Reference MicOch1.0

    Range
    3804228..3834433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005366580.2 → XP_005366637.1  E3 ubiquitin-protein ligase TRIM23 isoform X2

    UniProtKB/TrEMBL
    A0A8J6GX17
    Related
    ENSMOCP00000021394.1, ENSMOCT00000025226.1
    Conserved Domains (6) summary
    smart00336
    Location:173 → 219
    BBOX; B-Box-type zinc finger
    cd04158
    Location:406 → 574
    ARD1; (ADP-ribosylation factor domain protein 1 (ARD1)
    cd00021
    Location:125 → 168
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    pfam00071
    Location:406 → 565
    Ras; Ras family
    pfam13445
    Location:31 → 73
    zf-RING_UBOX; RING-type zinc-finger
    cl23765
    Location:226 → 370
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  2. XM_026788973.1 → XP_026644774.1  E3 ubiquitin-protein ligase TRIM23 isoform X1

    UniProtKB/TrEMBL
    A0A8J6GX17
    Conserved Domains (5) summary
    smart00336
    Location:183 → 229
    BBOX; B-Box-type zinc finger
    cd04158
    Location:416 → 584
    ARD1; (ADP-ribosylation factor domain protein 1 (ARD1)
    cd00021
    Location:135 → 178
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd16645
    Location:28 → 77
    mRING-HC-C3HC3D_TRIM23_C-IX; Modified RING finger, HC subclass (C3HC3D-type), found in tripartite motif-containing protein 23 (TRIM23) and similar proteins
    cl25407
    Location:236 → 380
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.