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Lpp LIM domain containing preferred translocation partner in lipoma [ Microtus ochrogaster (prairie vole) ]

Gene ID: 101984509, updated on 8-Mar-2024

Summary

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Gene symbol
Lpp
Gene description
LIM domain containing preferred translocation partner in lipoma
See related
Ensembl:ENSMOCG00000002241
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus ochrogaster
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
102 current MicOch1.0 (GCF_000317375.1) 2 NC_022010.1 (34092562..34692743)

Chromosome 2 - NC_022010.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101983752 Neighboring gene myosin light polypeptide 6-like Neighboring gene U6 spliceosomal RNA Neighboring gene tumor protein p63 regulated 1 Neighboring gene RNA transcription, translation and transport factor protein pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_022010.1 Chromosome 2 Reference MicOch1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lipoma-preferred partner
Names
lipoma-preferred partner homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microtus ochrogaster Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MicOch1.0

Genomic

  1. NC_022010.1 Reference MicOch1.0

    Range
    34092562..34692743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026785266.1 → XP_026641067.1  lipoma-preferred partner isoform X1

    UniProtKB/TrEMBL
    A0A8J6G8R5
    Related
    ENSMOCP00000002814.1, ENSMOCT00000003001.1
    Conserved Domains (4) summary
    cd09350
    Location:417 → 470
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:537 → 602
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl02475
    Location:477 → 536
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    cl26464
    Location:112 → 291
    Atrophin-1; Atrophin-1 family

  2. XM_013351721.2 → XP_013207175.1  lipoma-preferred partner isoform X2

    UniProtKB/TrEMBL
    A0A8J6G8R5
    Related
    ENSMOCP00000002817.1, ENSMOCT00000003004.1
    Conserved Domains (4) summary
    cd09350
    Location:293 → 346
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    pfam08418
    Location:12 → 144
    Pol_alpha_B_N; DNA polymerase alpha subunit B N-terminal
    cl02475
    Location:413 → 478
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    cl23807
    Location:106 → 167
    WWbp; WW-domain ligand protein
Nucleotide Protein
Heading Accession and Version

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