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Cc2d2a coiled-coil and C2 domain containing 2A [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101977790, updated on 8-Mar-2024

Summary

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Gene symbol
Cc2d2a
Gene description
coiled-coil and C2 domain containing 2A
Locus tag
H1C71_037513
See related
EnsemblRapid:ENSSTOG00015002512
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Cc2d2a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
41
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405285.1 (58614110..58714043, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936477.1 (12315829..12415915, complement)

NW_024405285.1Genomic Context describing neighboring genes Neighboring gene bone marrow stromal cell antigen 1 Neighboring gene F-box and leucine rich repeat protein 5 Neighboring gene C1q and TNF related 7 Neighboring gene uncharacterized LOC120892407 Neighboring gene uncharacterized LOC120892406

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in non-motile cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to ciliary transition zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ciliary transition zone IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coiled-coil and C2 domain-containing protein 2A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405285.1 Reference HiC_Itri_2 Primary Assembly

    Range
    58614110..58714043 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040292648.1 → XP_040148582.1  coiled-coil and C2 domain-containing protein 2A isoform X5

    UniProtKB/TrEMBL
    I3M5N8
    Conserved Domains (2) summary
    COG1196
    Location:429 → 582
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl14603
    Location:1109 → 1147
    C2; C2 domain

  2. XM_040292651.1 → XP_040148585.1  coiled-coil and C2 domain-containing protein 2A isoform X7

    UniProtKB/TrEMBL
    I3M5N8
    Conserved Domains (2) summary
    COG1196
    Location:418 → 571
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl14603
    Location:1093 → 1131
    C2; C2 domain

  3. XM_040292649.1 → XP_040148583.1  coiled-coil and C2 domain-containing protein 2A isoform X6

    UniProtKB/TrEMBL
    I3M5N8
    Related
    ENSSTOP00015003038.1, ENSSTOT00015003390.1
    Conserved Domains (2) summary
    COG1196
    Location:418 → 571
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl14603
    Location:1098 → 1136
    C2; C2 domain

  4. XM_040292644.1 → XP_040148578.1  coiled-coil and C2 domain-containing protein 2A isoform X1

    UniProtKB/TrEMBL
    I3M5N8
    Conserved Domains (2) summary
    COG1196
    Location:381 → 534
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl14603
    Location:1061 → 1099
    C2; C2 domain

  5. XM_040292647.1 → XP_040148581.1  coiled-coil and C2 domain-containing protein 2A isoform X4

    UniProtKB/TrEMBL
    I3M5N8
    Conserved Domains (2) summary
    COG1196
    Location:370 → 523
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl14603
    Location:1045 → 1083
    C2; C2 domain

  6. XM_040292646.1 → XP_040148580.1  coiled-coil and C2 domain-containing protein 2A isoform X3

    UniProtKB/TrEMBL
    I3M5N8
    Conserved Domains (2) summary
    COG1196
    Location:370 → 523
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl14603
    Location:1050 → 1088
    C2; C2 domain

  7. XM_040292645.1 → XP_040148579.1  coiled-coil and C2 domain-containing protein 2A isoform X2

    UniProtKB/TrEMBL
    I3M5N8
    Conserved Domains (2) summary
    COG1196
    Location:381 → 534
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl14603
    Location:1056 → 1094
    C2; C2 domain

  8. XM_040292653.1 → XP_040148587.1  coiled-coil and C2 domain-containing protein 2A isoform X1

    UniProtKB/TrEMBL
    I3M5N8
    Conserved Domains (2) summary
    COG1196
    Location:381 → 534
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl14603
    Location:1061 → 1099
    C2; C2 domain

  9. XM_040292652.1 → XP_040148586.1  coiled-coil and C2 domain-containing protein 2A isoform X1

    UniProtKB/TrEMBL
    I3M5N8
    Conserved Domains (2) summary
    COG1196
    Location:381 → 534
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl14603
    Location:1061 → 1099
    C2; C2 domain
Nucleotide Protein
Heading Accession and Version

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