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Tor1b torsin family 1 member B [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101977709, updated on 8-Mar-2024

Summary

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Gene symbol
Tor1b
Gene description
torsin family 1 member B
Locus tag
H1C71_011686
See related
EnsemblRapid:ENSSTOG00015020825
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404947.1 (197235414..197241536)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936487.1 (17003941..17011028)

NW_024404947.1Genomic Context describing neighboring genes Neighboring gene prostaglandin E synthase Neighboring gene uncharacterized LOC120889924 Neighboring gene torsin family 1 member A Neighboring gene chromosome unknown C9orf78 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone cofactor-dependent protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum lumen IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024404947.1 Reference HiC_Itri_2 Primary Assembly

    Range
    197235414..197241536
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005321072.4 → XP_005321129.1  torsin-1B

    UniProtKB/TrEMBL
    I3M534
    Related
    ENSSTOP00015025691.1, ENSSTOT00015027930.1
    Conserved Domains (2) summary
    COG0542
    Location:70 → 309
    ClpA; ATP-dependent Clp protease ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones]
    pfam06309
    Location:66 → 175
    Torsin
Nucleotide Protein
Heading Accession and Version

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