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Ap3s1 adaptor related protein complex 3 subunit sigma 1 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101977058, updated on 8-Mar-2024

Summary

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Gene symbol
Ap3s1
Gene description
adaptor related protein complex 3 subunit sigma 1
Locus tag
H1C71_002295
See related
EnsemblRapid:ENSSTOG00015014913
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024407213.1 (128306979..128387501)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936742.1 (1007684..1088272)

NW_024407213.1Genomic Context describing neighboring genes Neighboring gene mitochondrial import inner membrane translocase subunit Tim8 A-like Neighboring gene cysteine dioxygenase type 1 Neighboring gene autophagy related 12 Neighboring gene laeverin Neighboring gene ADP ribosylation factor like GTPase 14 effector protein like Neighboring gene COMM domain containing 10 Neighboring gene transfer RNA glutamic acid (anticodon CUC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi to vacuole transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AP-3 adaptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AP-3 complex subunit sigma-1
Names
adaptor related protein complex 3 sigma 1 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024407213.1 Reference HiC_Itri_2 Primary Assembly

    Range
    128306979..128387501
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021736035.2 → XP_021591710.1  AP-3 complex subunit sigma-1 isoform X2

    Conserved Domains (1) summary
    cd14834
    Location:11 → 133
    AP3_sigma; AP-3 complex subunit sigma

  2. XM_021736036.2 → XP_021591711.1  AP-3 complex subunit sigma-1 isoform X4

    UniProtKB/TrEMBL
    A0A287D2W2
    Related
    ENSSTOP00015018222.1, ENSSTOT00015019989.1
    Conserved Domains (1) summary
    cd14834
    Location:1 → 146
    AP3_sigma; AP-3 complex subunit sigma

  3. XM_005339493.4 → XP_005339550.1  AP-3 complex subunit sigma-1 isoform X3

    See identical proteins and their annotated locations for XP_005339550.1

    UniProtKB/TrEMBL
    I3MHX9
    Related
    ENSSTOP00015018224.1, ENSSTOT00015019991.1
    Conserved Domains (1) summary
    cd14834
    Location:1 → 146
    AP3_sigma; AP-3 complex subunit sigma

  4. XM_021736034.2 → XP_021591709.1  AP-3 complex subunit sigma-1 isoform X1

    Conserved Domains (1) summary
    cd14834
    Location:1 → 146
    AP3_sigma; AP-3 complex subunit sigma

RNA

  1. XR_002485584.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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