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LOC101976892 myosin-6 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101976892, updated on 16-Nov-2023

Summary

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Gene symbol
LOC101976892
Gene description
myosin-6
Locus tag
H1C71_015724
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Also known as
Myh6
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024408640.1 (32072149..32115962)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004938047.1 (7..11037, complement)

NW_024408640.1Genomic Context describing neighboring genes Neighboring gene disintegrin and metalloproteinase domain-containing protein 20-like Neighboring gene myosin-7 Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene transfer RNA proline (anticodon UGG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microfilament motor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle transport along actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myosin-6
Names
myosin, heavy chain 6, cardiac muscle, alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024408640.1 Reference HiC_Itri_2 Primary Assembly

    Range
    32072149..32115962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040275346.1 → XP_040131280.1  myosin-6

    Conserved Domains (1) summary
    cd01377
    Location:137 → 806
    MYSc_class_II; class II myosins, motor domain
Nucleotide Protein
Heading Accession and Version

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