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Pax7 paired box 7 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101974428, updated on 8-Mar-2024

Summary

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Gene symbol
Pax7
Gene description
paired box 7
Locus tag
H1C71_032884
See related
EnsemblRapid:ENSSTOG00015013877
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Pax7 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405058.1 (39220382..39310785)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936474.1 (5045284..5131859)

NW_024405058.1Genomic Context describing neighboring genes Neighboring gene kelch domain containing 7A Neighboring gene U6 spliceosomal RNA Neighboring gene taste 1 receptor member 2 Neighboring gene aldehyde dehydrogenase 4 family member A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired box protein Pax-7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405058.1 Reference HiC_Itri_2 Primary Assembly

    Range
    39220382..39310785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021720470.2 → XP_021576145.1  paired box protein Pax-7

    UniProtKB/TrEMBL
    I3N1K4
    Related
    ENSSTOP00015016977.1, ENSSTOT00015018609.1
    Conserved Domains (2) summary
    smart00351
    Location:34 → 159
    PAX; Paired Box domain
    pfam00046
    Location:218 → 272
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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