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C4bpb complement component 4 binding protein beta [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101973827, updated on 8-Mar-2024

Summary

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Gene symbol
C4bpb
Gene description
complement component 4 binding protein beta
Locus tag
H1C71_027954
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human all
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Genomic context

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See C4bpb in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024409344.1 (68306397..68319286, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936557.1 (5546692..5561531, complement)

NW_024409344.1Genomic Context describing neighboring genes Neighboring gene zona pellucida sperm-binding protein 3 receptor-like Neighboring gene C4b-binding protein alpha chain Neighboring gene uncharacterized LOC120887462 Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Neighboring gene chromosome unknown C1orf116 homolog Neighboring gene Fc alpha and mu receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of complement activation, classical pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C4b-binding protein beta chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024409344.1 Reference HiC_Itri_2 Primary Assembly

    Range
    68306397..68319286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005329471.4 → XP_005329528.3  C4b-binding protein beta chain isoform X2

    Conserved Domains (2) summary
    PHA02927
    Location:46 → 134
    PHA02927; secreted complement-binding protein; Provisional
    cl17011
    Location:168 → 244
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  2. XM_040277937.1 → XP_040133871.1  C4b-binding protein beta chain isoform X1

    Conserved Domains (1) summary
    PHA02927
    Location:46 → 134
    PHA02927; secreted complement-binding protein; Provisional

  3. XM_040277936.1 → XP_040133870.1  C4b-binding protein beta chain isoform X1

    Conserved Domains (1) summary
    PHA02927
    Location:46 → 134
    PHA02927; secreted complement-binding protein; Provisional
Nucleotide Protein
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Gene LinkOut

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