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Satb2 SATB homeobox 2 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101969467, updated on 8-Mar-2024

Summary

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Gene symbol
Satb2
Gene description
SATB homeobox 2
Locus tag
H1C71_020513
See related
EnsemblRapid:ENSSTOG00015009263
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405303.1 (156631640..156803110, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936506.1 (34968..206432)

NW_024405303.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120892788 Neighboring gene small nucleolar RNA SNORD88 Neighboring gene cytochrome c oxidase subunit 7B, mitochondrial-like Neighboring gene formiminotransferase cyclodeaminase N-terminal like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein SATB2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405303.1 Reference HiC_Itri_2 Primary Assembly

    Range
    156631640..156803110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005324333.2 → XP_005324390.1  DNA-binding protein SATB2

    UniProtKB/TrEMBL
    A0A287D964
    Related
    ENSSTOP00015011427.1, ENSSTOT00015012551.1
    Conserved Domains (4) summary
    smart00389
    Location:574 → 631
    HOX; Homeodomain
    cd11585
    Location:20 → 115
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:437 → 516
    CUT; CUT domain
    pfam16557
    Location:122 → 192
    CUTL; CUT1-like DNA-binding domain of SATB
Nucleotide Protein
Heading Accession and Version

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