U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101969247, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Bloc1s6
Gene description
biogenesis of lysosomal organelles complex 1 subunit 6
Locus tag
H1C71_016723
See related
EnsemblRapid:ENSSTOG00015018141
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Bloc1s6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024408640.1 (90361030..90378186)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936471.1 (8209091..8226249)

NW_024408640.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene solute carrier family 30 member 4 Neighboring gene deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like Neighboring gene sulfide quinone oxidoreductase Neighboring gene transcription initiation factor TFIID subunit 9-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BLOC-1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
biogenesis of lysosome-related organelles complex 1 subunit 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024408640.1 Reference HiC_Itri_2 Primary Assembly

    Range
    90361030..90378186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005316528.4 → XP_005316585.1  biogenesis of lysosome-related organelles complex 1 subunit 6 isoform X1

    UniProtKB/TrEMBL
    I3LYX1
    Related
    ENSSTOP00015022375.1, ENSSTOT00015024408.1
    Conserved Domains (1) summary
    pfam14712
    Location:51 → 140
    Snapin_Pallidin; Snapin/Pallidin

  2. XM_021726551.2 → XP_021582226.1  biogenesis of lysosome-related organelles complex 1 subunit 6 isoform X2

    Conserved Domains (1) summary
    pfam14712
    Location:56 → 145
    Snapin_Pallidin; Snapin/Pallidin
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.