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Txndc11 thioredoxin domain containing 11 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101967670, updated on 8-Mar-2024

Summary

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Gene symbol
Txndc11
Gene description
thioredoxin domain containing 11
Locus tag
H1C71_028853
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024409344.1 (111647287..111706668, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936530.1 (9492728..9552109, complement)

NW_024409344.1Genomic Context describing neighboring genes Neighboring gene RecQ mediated genome instability 2 Neighboring gene lipopolysaccharide induced TNF factor Neighboring gene stannin Neighboring gene zinc finger CCCH-type containing 7A Neighboring gene ribosomal L1 domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
thioredoxin domain-containing protein 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024409344.1 Reference HiC_Itri_2 Primary Assembly

    Range
    111647287..111706668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021727665.1 → XP_021583340.1  thioredoxin domain-containing protein 11 isoform X2

    UniProtKB/TrEMBL
    I3MQV1
    Conserved Domains (4) summary
    cd02995
    Location:451 → 553
    PDI_a_PDI_a'_C; PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein ...
    PTZ00102
    Location:324 → 557
    PTZ00102; disulphide isomerase; Provisional
    pfam08614
    Location:561 → 684
    ATG16; Autophagy protein 16 (ATG16)
    pfam13848
    Location:50 → 187
    Thioredoxin_6; Thioredoxin-like domain

  2. XM_005327186.3 → XP_005327243.1  thioredoxin domain-containing protein 11 isoform X1

    UniProtKB/TrEMBL
    I3MQV1
    Conserved Domains (4) summary
    cd02995
    Location:466 → 568
    PDI_a_PDI_a'_C; PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein ...
    PTZ00102
    Location:339 → 572
    PTZ00102; disulphide isomerase; Provisional
    pfam08614
    Location:576 → 699
    ATG16; Autophagy protein 16 (ATG16)
    pfam13848
    Location:65 → 202
    Thioredoxin_6; Thioredoxin-like domain
Nucleotide Protein
Heading Accession and Version

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