U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Polr2i RNA polymerase II subunit I [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101964736, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Polr2i
Gene description
RNA polymerase II subunit I
Locus tag
H1C71_038935
See related
EnsemblRapid:ENSSTOG00015017679
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024409349.1 (11360119..11361720, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936922.1 (130248..131843, complement)

NW_024409349.1Genomic Context describing neighboring genes Neighboring gene THAP domain containing 8 Neighboring gene WD repeat domain 62 Neighboring gene ovo like zinc finger 3 Neighboring gene tubulin folding cofactor B Neighboring gene ribosome maturation protein SBDS-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription-coupled nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DNA-directed RNA polymerase II subunit RPB9
Names
polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024409349.1 Reference HiC_Itri_2 Primary Assembly

    Range
    11360119..11361720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005341946.3 → XP_005342003.1  DNA-directed RNA polymerase II subunit RPB9

    See identical proteins and their annotated locations for XP_005342003.1

    UniProtKB/TrEMBL
    I3MDG9
    Conserved Domains (2) summary
    COG1594
    Location:14 → 125
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
    cd10508
    Location:74 → 124
    Zn-ribbon_RPB9; C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II

  2. XM_005341947.3 → XP_005342004.1  DNA-directed RNA polymerase II subunit RPB9

    See identical proteins and their annotated locations for XP_005342004.1

    UniProtKB/TrEMBL
    I3MDG9
    Related
    ENSSTOP00015021805.1, ENSSTOT00015023806.1
    Conserved Domains (2) summary
    COG1594
    Location:14 → 125
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
    cd10508
    Location:74 → 124
    Zn-ribbon_RPB9; C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.