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Senp1 SUMO specific peptidase 1 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101962286, updated on 8-Mar-2024

Summary

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Gene symbol
Senp1
Gene description
SUMO specific peptidase 1
See related
EnsemblRapid:ENSSTOG00015017728
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404945.1 (67175011..67229945)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936512.1 (5932594..5989819, complement)

NW_024404945.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 10AD1 Neighboring gene ankyrin repeat and SOCS box containing 8 Neighboring gene coiled-coil domain containing 184 Neighboring gene phosphofructokinase, muscle Neighboring gene collagen type II alpha 1 chain Neighboring gene transmembrane protein 106C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deSUMOylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein desumoylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sentrin-specific protease 1
Names
SUMO1/sentrin specific peptidase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024404945.1 Reference HiC_Itri_2 Primary Assembly

    Range
    67175011..67229945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005324870.3 → XP_005324927.1  sentrin-specific protease 1 isoform X4

    See identical proteins and their annotated locations for XP_005324927.1

    UniProtKB/TrEMBL
    I3LZG4
    Related
    ENSSTOP00015021876.1, ENSSTOT00015023880.1
    Conserved Domains (2) summary
    COG5160
    Location:445 → 645
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    PRK04863
    Location:354 → 448
    mukB; chromosome partition protein MukB

  2. XM_021726122.2 → XP_021581797.1  sentrin-specific protease 1 isoform X3

    Conserved Domains (2) summary
    COG5160
    Location:459 → 659
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    PRK04863
    Location:368 → 462
    mukB; chromosome partition protein MukB

  3. XM_021726121.2 → XP_021581796.1  sentrin-specific protease 1 isoform X1

    Conserved Domains (2) summary
    COG5160
    Location:491 → 691
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl25672
    Location:400 → 494
    MukB_hinge; MukB hinge domain

  4. XM_013358422.3 → XP_013213876.1  sentrin-specific protease 1 isoform X2

    Conserved Domains (3) summary
    cd16269
    Location:457 → 466
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:386 → 466
    GBP_C; Guanylate-binding protein, C-terminal domain
    cl23802
    Location:453 → 675
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  5. XM_040280743.1 → XP_040136677.1  sentrin-specific protease 1 isoform X3

    Conserved Domains (2) summary
    COG5160
    Location:459 → 659
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    PRK04863
    Location:368 → 462
    mukB; chromosome partition protein MukB

  6. XM_040280745.1 → XP_040136679.1  sentrin-specific protease 1 isoform X4

    UniProtKB/TrEMBL
    I3LZG4
    Conserved Domains (2) summary
    COG5160
    Location:445 → 645
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    PRK04863
    Location:354 → 448
    mukB; chromosome partition protein MukB
Nucleotide Protein
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