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Tpcn1 two pore segment channel 1 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101962225, updated on 8-Mar-2024

Summary

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Gene symbol
Tpcn1
Gene description
two pore segment channel 1
Locus tag
H1C71_005996
See related
EnsemblRapid:ENSSTOG00015014112
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Tpcn1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405118.1 (148612146..148663274)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936668.1 (3111038..3162163)

NW_024405118.1Genomic Context describing neighboring genes Neighboring gene RBPJ interacting and tubulin associated 1 Neighboring gene IQ motif containing D Neighboring gene solute carrier family 8 member B1 Neighboring gene phospholipase B domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
two pore calcium channel protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405118.1 Reference HiC_Itri_2 Primary Assembly

    Range
    148612146..148663274
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021734261.2 → XP_021589936.1  two pore calcium channel protein 1 isoform X1

    UniProtKB/TrEMBL
    I3LZK2
    Conserved Domains (1) summary
    pfam00520
    Location:441 → 692
    Ion_trans; Ion transport protein

  2. XM_013363566.3 → XP_013219020.1  two pore calcium channel protein 1 isoform X1

    UniProtKB/TrEMBL
    I3LZK2
    Related
    ENSSTOP00015017354.1, ENSSTOT00015019019.1
    Conserved Domains (1) summary
    pfam00520
    Location:441 → 692
    Ion_trans; Ion transport protein

  3. XM_040289442.1 → XP_040145376.1  two pore calcium channel protein 1 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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