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Pld6 phospholipase D family member 6 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101961957, updated on 8-Mar-2024

Summary

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Gene symbol
Pld6
Gene description
phospholipase D family member 6
Locus tag
H1C71_023145
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Pld6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405602.1 (61994337..61999354)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936741.1 (867501..872899, complement)

NW_024405602.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120884251 Neighboring gene COP9 signalosome subunit 3 Neighboring gene folliculin Neighboring gene myosin phosphatase Rho interacting protein Neighboring gene uncharacterized LOC120884253

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity, producing 5'-phosphomonoesters IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in piRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial cardiolipin hydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405602.1 Reference HiC_Itri_2 Primary Assembly

    Range
    61994337..61999354
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005339444.3 → XP_005339501.1  mitochondrial cardiolipin hydrolase

    UniProtKB/TrEMBL
    I3M3Y4
    Conserved Domains (1) summary
    cd09171
    Location:93 → 204
    PLDc_vPLD6_like; Catalytic domain of vertebrate phospholipase D6 and similar proteins
Nucleotide Protein
Heading Accession and Version

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