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Sall4 spalt like transcription factor 4 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101960002, updated on 8-Mar-2024

Summary

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Gene symbol
Sall4
Gene description
spalt like transcription factor 4
Locus tag
H1C71_018415
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024408640.1 (187831936..187849998)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936514.1 (3285778..3302179)

NW_024408640.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120886827 Neighboring gene ZFP64 zinc finger protein Neighboring gene ATPase phospholipid transporting 9A (putative) Neighboring gene nuclear factor of activated T-cells, cytoplasmic 2-like Neighboring gene nuclear factor of activated T cells 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sal-like protein 4
Names
sal-like 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024408640.1 Reference HiC_Itri_2 Primary Assembly

    Range
    187831936..187849998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005325209.3 → XP_005325266.1  sal-like protein 4 isoform X1

    Conserved Domains (5) summary
    COG5048
    Location:375 → 658
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:563 → 583
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:621 → 643
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:575 → 600
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:374 → 422
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  2. XM_040275529.1 → XP_040131463.1  sal-like protein 4 isoform X2

    UniProtKB/TrEMBL
    I3N5E3
    Conserved Domains (2) summary
    smart00355
    Location:454 → 476
    ZnF_C2H2; zinc finger
    sd00017
    Location:428 → 448
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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