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Clic6 chloride intracellular channel 6 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101958477, updated on 8-Mar-2024

Summary

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Gene symbol
Clic6
Gene description
chloride intracellular channel 6
Locus tag
H1C71_041625
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404971.1 (29651093..29693204)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936500.1 (7774962..7816658, complement)

NW_024404971.1Genomic Context describing neighboring genes Neighboring gene regulator of calcineurin 1 Neighboring gene uncharacterized LOC120890452 Neighboring gene uncharacterized LOC120890381 Neighboring gene RUNX family transcription factor 1 Neighboring gene uncharacterized LOC120890382

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D2 dopamine receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables D3 dopamine receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables D4 dopamine receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chloride intracellular channel protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024404971.1 Reference HiC_Itri_2 Primary Assembly

    Range
    29651093..29693204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005323595.3 → XP_005323652.1  chloride intracellular channel protein 6 isoform X1

    UniProtKB/TrEMBL
    I3MM62
    Conserved Domains (2) summary
    TIGR00862
    Location:354 → 587
    O-ClC; intracellular chloride channel protein
    TIGR00927
    Location:25 → 273
    2A1904; K+-dependent Na+/Ca+ exchanger

  2. XM_040287019.1 → XP_040142953.1  chloride intracellular channel protein 6 isoform X2

    Conserved Domains (1) summary
    TIGR00862
    Location:2 → 229
    O-ClC; intracellular chloride channel protein
Nucleotide Protein
Heading Accession and Version

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