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Atp9b ATPase phospholipid transporting 9B (putative) [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101957459, updated on 8-Mar-2024

Summary

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Gene symbol
Atp9b
Gene description
ATPase phospholipid transporting 9B (putative)
Locus tag
H1C71_036204
See related
EnsemblRapid:ENSSTOG00015005405
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404944.1 (15283002..15525515, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936616.1 (604132..846645, complement)

NW_024404944.1Genomic Context describing neighboring genes Neighboring gene CTD phosphatase subunit 1 Neighboring gene nuclear factor of activated T cells 1 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC120885236 Neighboring gene spalt like transcription factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled intramembrane lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phospholipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable phospholipid-transporting ATPase IIB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024404944.1 Reference HiC_Itri_2 Primary Assembly

    Range
    15283002..15525515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021732511.2 → XP_021588186.1  probable phospholipid-transporting ATPase IIB isoform X1

    UniProtKB/TrEMBL
    A0A287D7F2
    Conserved Domains (2) summary
    cd07541
    Location:80 → 1023
    P-type_ATPase_APLT_Neo1-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Neo1p and human putative APLT, ATP9B
    pfam13246
    Location:516 → 627
    Cation_ATPase; Cation transport ATPase (P-type)

  2. XM_021732515.1 → XP_021588190.1  probable phospholipid-transporting ATPase IIB isoform X4

    UniProtKB/TrEMBL
    A0A287D7F2, I3M8N3
    Conserved Domains (2) summary
    pfam13246
    Location:319 → 430
    Cation_ATPase; Cation transport ATPase (P-type)
    cl21460
    Location:1 → 826
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  3. XM_013362441.2 → XP_013217895.2  probable phospholipid-transporting ATPase IIB isoform X3

    UniProtKB/TrEMBL
    I3M8N3
    Related
    ENSSTOP00015006566.1, ENSSTOT00015007255.1
    Conserved Domains (2) summary
    cd07541
    Location:106 → 1030
    P-type_ATPase_APLT_Neo1-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Neo1p and human putative APLT, ATP9B
    pfam13246
    Location:523 → 634
    Cation_ATPase; Cation transport ATPase (P-type)

  4. XM_021732512.2 → XP_021588187.1  probable phospholipid-transporting ATPase IIB isoform X2

    UniProtKB/TrEMBL
    A0A287D7F2
    Related
    ENSSTOP00015006565.1, ENSSTOT00015007254.1
    Conserved Domains (2) summary
    cd07541
    Location:80 → 1004
    P-type_ATPase_APLT_Neo1-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Neo1p and human putative APLT, ATP9B
    pfam13246
    Location:497 → 608
    Cation_ATPase; Cation transport ATPase (P-type)
Nucleotide Protein
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