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Egfl6 EGF like domain multiple 6 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101957280, updated on 8-Mar-2024

Summary

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Gene symbol
Egfl6
Gene description
EGF like domain multiple 6
Locus tag
H1C71_029919
See related
EnsemblRapid:ENSSTOG00015001279
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Egfl6 in Genome Data Viewer
Location:
chromosome: X
Exon count:
12
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) X NC_053502.1 (3156546..3214971)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936470.1 (3156593..3215039)

Chromosome X - NC_053502.1Genomic Context describing neighboring genes Neighboring gene thymosin beta 4 X-linked Neighboring gene uncharacterized LOC120890461 Neighboring gene transcription elongation factor A N-terminal and central domain containing Neighboring gene RAB9A, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
epidermal growth factor-like protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NC_053502.1 Reference HiC_Itri_2 Primary Assembly

    Range
    3156546..3214971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005315971.4 → XP_005316028.1  epidermal growth factor-like protein 6

    UniProtKB/TrEMBL
    I3MT28
    Related
    ENSSTOP00015001553.1, ENSSTOT00015001720.1
    Conserved Domains (4) summary
    cd06263
    Location:403 → 545
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    smart00179
    Location:174 → 207
    EGF_CA; Calcium-binding EGF-like domain
    pfam00629
    Location:403 → 546
    MAM; MAM domain, meprin/A5/mu
    pfam12947
    Location:223 → 258
    EGF_3; EGF domain
Nucleotide Protein
Heading Accession and Version

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