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Golgb1 golgin B1 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101956958, updated on 8-Mar-2024

Summary

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Gene symbol
Golgb1
Gene description
golgin B1
Locus tag
H1C71_024180
See related
EnsemblRapid:ENSSTOG00015007544
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Golgb1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405602.1 (129372227..129436201)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936536.1 (8085805..8149764, complement)

NW_024405602.1Genomic Context describing neighboring genes Neighboring gene ELL associated factor 2 Neighboring gene armadillo repeat-containing X-linked protein 3-like Neighboring gene IQ motif containing B1 Neighboring gene hematopoietic cell-specific Lyn substrate 1 Neighboring gene F-box protein 40

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cis-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
golgin subfamily B member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405602.1 Reference HiC_Itri_2 Primary Assembly

    Range
    129372227..129436201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040270284.1 → XP_040126218.1  golgin subfamily B member 1 isoform X6

    Conserved Domains (3) summary
    COG1196
    Location:1853 → 2677
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK03918
    Location:1499 → 2058
    PRK03918; DNA double-strand break repair ATPase Rad50
    TIGR02168
    Location:766 → 1561
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_005327648.4 → XP_005327705.1  golgin subfamily B member 1 isoform X1

    UniProtKB/TrEMBL
    I3MUM4
    Related
    ENSSTOP00015009714.1, ENSSTOT00015010682.1
    Conserved Domains (3) summary
    COG1196
    Location:1853 → 2677
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:766 → 1561
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    NF033930
    Location:1604 → 1845
    pneumo_PspA; pneumococcal surface protein A

  3. XM_013359708.3 → XP_013215162.1  golgin subfamily B member 1 isoform X2

    Conserved Domains (3) summary
    COG1196
    Location:1848 → 2672
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:761 → 1556
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    NF033930
    Location:1599 → 1840
    pneumo_PspA; pneumococcal surface protein A

  4. XM_013359709.3 → XP_013215163.1  golgin subfamily B member 1 isoform X3

    Conserved Domains (3) summary
    COG1196
    Location:1847 → 2671
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:760 → 1555
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    NF033930
    Location:1598 → 1839
    pneumo_PspA; pneumococcal surface protein A

  5. XM_021727974.2 → XP_021583649.1  golgin subfamily B member 1 isoform X5

    UniProtKB/TrEMBL
    I3MEP5
    Related
    ENSSTOP00015009745.1, ENSSTOT00015010713.1
    Conserved Domains (3) summary
    COG1196
    Location:1812 → 2636
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:725 → 1520
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    NF033930
    Location:1563 → 1804
    pneumo_PspA; pneumococcal surface protein A

  6. XM_021727973.2 → XP_021583648.1  golgin subfamily B member 1 isoform X4

    Related
    ENSSTOP00015009538.1, ENSSTOT00015010490.1
    Conserved Domains (3) summary
    COG1196
    Location:1815 → 2639
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:728 → 1523
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    NF033930
    Location:1566 → 1807
    pneumo_PspA; pneumococcal surface protein A
Nucleotide Protein
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