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Pals1 protein associated with LIN7 1, MAGUK p55 family member [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101956646, updated on 8-Mar-2024

Summary

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Gene symbol
Pals1
Gene description
protein associated with LIN7 1, MAGUK p55 family member
Locus tag
H1C71_016186
See related
EnsemblRapid:ENSSTOG00015011979
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Also known as
Mpp5
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024408640.1 (63464311..63554909, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936495.1 (10636762..10729060)

NW_024408640.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120886257 Neighboring gene uncharacterized LOC101975306 Neighboring gene ATPase H+ transporting V1 subunit D Neighboring gene X-ray repair cross-complementing protein 6-like Neighboring gene golgi associated RAB2 interactor family member 2 Neighboring gene proline-rich protein 13-like Neighboring gene gephyrin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in establishment or maintenance of epithelial cell apical/basal polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment or maintenance of polarity of embryonic epithelium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in generation of neurons IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in morphogenesis of an epithelial sheet IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MAGUK p55 subfamily member 5
Names
membrane palmitoylated protein 5
protein associated with LIN7 1, MAGUK family member

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024408640.1 Reference HiC_Itri_2 Primary Assembly

    Range
    63464311..63554909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005322808.4 → XP_005322865.1  MAGUK p55 subfamily member 5 isoform X1

    See identical proteins and their annotated locations for XP_005322865.1

    UniProtKB/TrEMBL
    I3LYT1
    Related
    ENSSTOP00015014686.1, ENSSTOT00015016101.1
    Conserved Domains (5) summary
    smart00569
    Location:189 → 237
    L27; domain in receptor targeting proteins Lin-2 and Lin-7
    cd12036
    Location:349 → 411
    SH3_MPP5; Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)
    smart00072
    Location:491 → 661
    GuKc; Guanylate kinase homologues
    cd00992
    Location:254 → 333
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09060
    Location:123 → 170
    L27_N

  2. XM_013357509.3 → XP_013212963.1  MAGUK p55 subfamily member 5 isoform X2

    Conserved Domains (5) summary
    smart00569
    Location:155 → 203
    L27; domain in receptor targeting proteins Lin-2 and Lin-7
    cd12036
    Location:315 → 377
    SH3_MPP5; Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)
    smart00072
    Location:457 → 627
    GuKc; Guanylate kinase homologues
    cd00992
    Location:220 → 299
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09060
    Location:89 → 136
    L27_N

  3. XM_021724819.2 → XP_021580494.1  MAGUK p55 subfamily member 5 isoform X1

    UniProtKB/TrEMBL
    I3LYT1
    Conserved Domains (5) summary
    smart00569
    Location:189 → 237
    L27; domain in receptor targeting proteins Lin-2 and Lin-7
    cd12036
    Location:349 → 411
    SH3_MPP5; Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)
    smart00072
    Location:491 → 661
    GuKc; Guanylate kinase homologues
    cd00992
    Location:254 → 333
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09060
    Location:123 → 170
    L27_N

  4. XM_040276118.1 → XP_040132052.1  MAGUK p55 subfamily member 5 isoform X2

    Conserved Domains (5) summary
    smart00569
    Location:155 → 203
    L27; domain in receptor targeting proteins Lin-2 and Lin-7
    cd12036
    Location:315 → 377
    SH3_MPP5; Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)
    smart00072
    Location:457 → 627
    GuKc; Guanylate kinase homologues
    cd00992
    Location:220 → 299
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09060
    Location:89 → 136
    L27_N
Nucleotide Protein
Heading Accession and Version

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