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Sp4 Sp4 transcription factor [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101955889, updated on 8-Mar-2024

Summary

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Gene symbol
Sp4
Gene description
Sp4 transcription factor
Locus tag
H1C71_004782
See related
EnsemblRapid:ENSSTOG00015006914
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405118.1 (79604405..79667938)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936546.1 (7279531..7342999)

NW_024405118.1Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily B member 5 Neighboring gene Sp8 transcription factor Neighboring gene dynein axonemal heavy chain 11 Neighboring gene uncharacterized LOC120891933 Neighboring gene cell division cycle associated 7 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
transcription factor Sp4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405118.1 Reference HiC_Itri_2 Primary Assembly

    Range
    79604405..79667938
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005328797.4 → XP_005328854.1  transcription factor Sp4 isoform X1

    UniProtKB/TrEMBL
    I3MF99
    Related
    ENSSTOP00015008410.1, ENSSTOT00015009294.1
    Conserved Domains (4) summary
    sd00017
    Location:648 → 670
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:706 → 728
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:692 → 715
    zf-H2C2_2; Zinc-finger double domain
    cd22536
    Location:31 → 647
    SP4_N; N-terminal domain of transcription factor Specificity Protein (SP) 4

  2. XM_021728750.2 → XP_021584425.1  transcription factor Sp4 isoform X2

    Conserved Domains (4) summary
    sd00017
    Location:632 → 654
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:690 → 712
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:676 → 699
    zf-H2C2_2; Zinc-finger double domain
    cd22536
    Location:15 → 631
    SP4_N; N-terminal domain of transcription factor Specificity Protein (SP) 4
Nucleotide Protein
Heading Accession and Version

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