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Irx6 iroquois homeobox 6 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101955738, updated on 8-Mar-2024

Summary

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Gene symbol
Irx6
Gene description
iroquois homeobox 6
Locus tag
H1C71_040377
See related
EnsemblRapid:ENSSTOG00015004349
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Irx6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024409349.1 (51916943..51924125, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936475.1 (7665100..7672132)

NW_024409349.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120887848 Neighboring gene uncharacterized LOC120888020 Neighboring gene uncharacterized LOC120887982 Neighboring gene uncharacterized LOC120888002

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
iroquois-class homeodomain protein IRX-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024409349.1 Reference HiC_Itri_2 Primary Assembly

    Range
    51916943..51924125 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021721333.2 → XP_021577008.1  iroquois-class homeodomain protein IRX-6 isoform X2

    Conserved Domains (2) summary
    COG5576
    Location:145 → 237
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam05920
    Location:161 → 200
    Homeobox_KN; Homeobox KN domain

  2. XM_040279640.1 → XP_040135574.1  iroquois-class homeodomain protein IRX-6 isoform X1

    UniProtKB/TrEMBL
    I3MP67
    Related
    ENSSTOP00015005252.1, ENSSTOT00015005821.1
    Conserved Domains (2) summary
    COG5576
    Location:145 → 237
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam05920
    Location:161 → 200
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein
Heading Accession and Version

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