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Hoxa1 homeobox A1 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101955545, updated on 8-Mar-2024

Summary

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Gene symbol
Hoxa1
Gene description
homeobox A1
Locus tag
H1C71_004853
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405118.1 (84509768..84512994, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936478.1 (3721662..3724471, complement)

NW_024405118.1Genomic Context describing neighboring genes Neighboring gene src kinase associated phosphoprotein 2 Neighboring gene uncharacterized LOC120891951 Neighboring gene 60S ribosomal protein L7-like Neighboring gene uncharacterized LOC106144672 Neighboring gene uncharacterized LOC120891953 Neighboring gene homeobox A2 Neighboring gene homeobox A3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405118.1 Reference HiC_Itri_2 Primary Assembly

    Range
    84509768..84512994 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005319137.2 → XP_005319194.1  homeobox protein Hox-A1 isoform X2

    UniProtKB/TrEMBL
    A0A287DAT4

  2. XM_005319136.2 → XP_005319193.1  homeobox protein Hox-A1 isoform X1

    UniProtKB/TrEMBL
    I3NAA2
    Conserved Domains (2) summary
    COG5576
    Location:178 → 288
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:235 → 288
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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