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PDLIM1 PDZ and LIM domain 1 [ Chrysemys picta (Painted turtle) ]

Gene ID: 101944960, updated on 8-Mar-2024

Summary

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Gene symbol
PDLIM1
Gene description
PDZ and LIM domain 1
See related
Ensembl:ENSCPBG00000025734
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Chrysemys_picta_BioNano-3.0.4 (GCF_000241765.4) 5 NC_024222.2 (43152830..43243278, complement)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) Unplaced Scaffold NW_007281409.1 (3752766..3843191)

Chromosome 5 - NC_024222.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101945791 Neighboring gene helicase, lymphoid specific Neighboring gene sorbin and SH3 domain containing 1 Neighboring gene eukaryotic translation initiation factor 3 subunit F

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PDZ and LIM domain protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysemys picta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Chrysemys_picta_BioNano-3.0.4 Primary Assembly

Genomic

  1. NC_024222.2 Reference Chrysemys_picta_BioNano-3.0.4 Primary Assembly

    Range
    43152830..43243278 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008171417.3 → XP_008169639.1  PDZ and LIM domain protein 1 isoform X1

    Conserved Domains (3) summary
    cd09448
    Location:318 → 369
    LIM_CLP36; This family represents the LIM domain of CLP36
    cd00992
    Location:4 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:202 → 291
    DUF4749; Domain of unknown function (DUF4749)

  2. XM_008171418.3 → XP_008169640.1  PDZ and LIM domain protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C3PEJ7
    Related
    ENSCPBP00000037120.1
    Conserved Domains (3) summary
    cd09448
    Location:258 → 309
    LIM_CLP36; This family represents the LIM domain of CLP36
    cd00992
    Location:4 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:138 → 231
    DUF4749; Domain of unknown function (DUF4749)

  3. XM_042850070.1 → XP_042706004.1  PDZ and LIM domain protein 1 isoform X2

    Conserved Domains (3) summary
    cd09448
    Location:268 → 319
    LIM_CLP36; This family represents the LIM domain of CLP36
    smart00228
    Location:1 → 33
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    pfam15936
    Location:152 → 236
    DUF4749; Domain of unknown function (DUF4749)

  4. XM_024107990.2 → XP_023963758.1  PDZ and LIM domain protein 1 isoform X2

    Conserved Domains (3) summary
    cd09448
    Location:268 → 319
    LIM_CLP36; This family represents the LIM domain of CLP36
    smart00228
    Location:1 → 33
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    pfam15936
    Location:152 → 236
    DUF4749; Domain of unknown function (DUF4749)

  5. XM_008171419.3 → XP_008169641.1  PDZ and LIM domain protein 1 isoform X4

    Conserved Domains (2) summary
    cd09448
    Location:197 → 248
    LIM_CLP36; This family represents the LIM domain of CLP36
    pfam15936
    Location:81 → 170
    DUF4749; Domain of unknown function (DUF4749)
Nucleotide Protein
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