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DDX5 DEAD-box helicase 5 [ Chrysemys picta (Painted turtle) ]

Gene ID: 101944072, updated on 8-Mar-2024

Summary

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Gene symbol
DDX5
Gene description
DEAD-box helicase 5
See related
Ensembl:ENSCPBG00000009227
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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See DDX5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
103 current Chrysemys_picta_BioNano-3.0.4 (GCF_000241765.4) Unplaced Scaffold NW_024885820.1 (8568593..8576266)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) Unplaced Scaffold NW_007281340.1 (5351770..5359417, complement)

NW_024885820.1Genomic Context describing neighboring genes Neighboring gene SMAD specific E3 ubiquitin protein ligase 2 Neighboring gene centrosomal protein 95 Neighboring gene DNA polymerase gamma 2, accessory subunit Neighboring gene mast cell immunoglobulin like receptor 1 Neighboring gene platelet and endothelial cell adhesion molecule 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysemys picta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Chrysemys_picta_BioNano-3.0.4 Primary Assembly

Genomic

  1. NW_024885820.1 Reference Chrysemys_picta_BioNano-3.0.4 Primary Assembly

    Range
    8568593..8576266
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005282905.4 → XP_005282962.1  probable ATP-dependent RNA helicase DDX5 isoform X4

    Conserved Domains (1) summary
    PTZ00110
    Location:23 → 462
    PTZ00110; helicase; Provisional

  2. XM_005282904.4 → XP_005282961.1  probable ATP-dependent RNA helicase DDX5 isoform X3

    UniProtKB/TrEMBL
    A0A8C3FR21
    Related
    ENSCPBP00000012179.1
    Conserved Domains (1) summary
    PTZ00110
    Location:29 → 468
    PTZ00110; helicase; Provisional

  3. XM_042841010.1 → XP_042696944.1  probable ATP-dependent RNA helicase DDX5 isoform X2

    Conserved Domains (1) summary
    PTZ00110
    Location:40 → 497
    PTZ00110; helicase; Provisional

  4. XM_005282903.4 → XP_005282960.1  probable ATP-dependent RNA helicase DDX5 isoform X1

    UniProtKB/TrEMBL
    A0A8C3FWT4
    Related
    ENSCPBP00000012182.1
    Conserved Domains (4) summary
    COG0513
    Location:161 → 633
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd00079
    Location:405 → 537
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:189 → 394
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam08061
    Location:585 → 619
    P68HR; P68HR (NUC004) repeat
Nucleotide Protein
Heading Accession and Version

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