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CHAF1B chromatin assembly factor 1 subunit B [ Chrysemys picta (Painted turtle) ]

Gene ID: 101935672, updated on 8-Mar-2024

Summary

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Gene symbol
CHAF1B
Gene description
chromatin assembly factor 1 subunit B
See related
Ensembl:ENSCPBG00000005207
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
103 current Chrysemys_picta_BioNano-3.0.4 (GCF_000241765.4) Unplaced Scaffold NW_024885715.1 (16766245..16790722)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) Unplaced Scaffold NW_007359903.1 (2434028..2457919, complement)

NW_024885715.1Genomic Context describing neighboring genes Neighboring gene DOP1 leucine zipper like protein B Neighboring gene MORC family CW-type zinc finger 3 Neighboring gene claudin 14 Neighboring gene SIM bHLH transcription factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication-dependent chromatin assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CAF-1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromatin assembly factor 1 subunit B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysemys picta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Chrysemys_picta_BioNano-3.0.4 Primary Assembly

Genomic

  1. NW_024885715.1 Reference Chrysemys_picta_BioNano-3.0.4 Primary Assembly

    Range
    16766245..16790722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005303313.4 → XP_005303370.1  chromatin assembly factor 1 subunit B isoform X1

    UniProtKB/TrEMBL
    A0A8C3FJD2
    Related
    ENSCPBP00000006559.1
    Conserved Domains (5) summary
    COG2319
    Location:62 → 385
    WD40; WD40 repeat [General function prediction only]
    pfam12238
    Location:521 → 572
    MSA-2c; Merozoite surface antigen 2c
    pfam15512
    Location:386 → 562
    CAF-1_p60_C; Chromatin assembly factor complex 1 subunit p60, C-terminal
    sd00039
    Location:16 → 64
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:13 → 249
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_008165219.3 → XP_008163441.1  chromatin assembly factor 1 subunit B isoform X2

    Conserved Domains (5) summary
    COG2319
    Location:62 → 381
    WD40; WD40 repeat [General function prediction only]
    pfam12238
    Location:518 → 569
    MSA-2c; Merozoite surface antigen 2c
    pfam15512
    Location:383 → 559
    CAF-1_p60_C; Chromatin assembly factor complex 1 subunit p60, C-terminal
    sd00039
    Location:16 → 64
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:13 → 249
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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