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AFAP1 actin filament associated protein 1 [ Chrysemys picta (Painted turtle) ]

Gene ID: 101935383, updated on 8-Mar-2024

Summary

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Gene symbol
AFAP1
Gene description
actin filament associated protein 1
See related
Ensembl:ENSCPBG00000023272
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
103 current Chrysemys_picta_BioNano-3.0.4 (GCF_000241765.4) Unplaced Scaffold NW_024885713.1 (37477908..37658834, complement)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) Unplaced Scaffold NW_007359859.1 (9706500..9887241, complement)

NW_024885713.1Genomic Context describing neighboring genes Neighboring gene GrpE like 1, mitochondrial Neighboring gene sortilin related VPS10 domain containing receptor 2 Neighboring gene actin binding LIM protein family member 2 Neighboring gene SH3 domain and tetratricopeptide repeats 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SH2 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin filament-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysemys picta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Chrysemys_picta_BioNano-3.0.4 Primary Assembly

Genomic

  1. NW_024885713.1 Reference Chrysemys_picta_BioNano-3.0.4 Primary Assembly

    Range
    37477908..37658834 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042855504.1 → XP_042711438.1  actin filament-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C3IFJ8, A0A8C3IJ47
    Conserved Domains (3) summary
    cd13306
    Location:146 → 252
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:350 → 450
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    TIGR02168
    Location:617 → 737
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_005300758.4 → XP_005300815.1  actin filament-associated protein 1 isoform X2

    See identical proteins and their annotated locations for XP_005300815.1

    UniProtKB/TrEMBL
    A0A8C3IFJ8, A0A8C3IJ47
    Related
    ENSCPBP00000033245.1
    Conserved Domains (3) summary
    cd13306
    Location:146 → 252
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:350 → 450
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    TIGR02168
    Location:617 → 737
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_005300755.4 → XP_005300812.1  actin filament-associated protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005300812.1

    UniProtKB/TrEMBL
    A0A8C3IJ47, A0A8C3PCU8
    Related
    ENSCPBP00000033241.1
    Conserved Domains (3) summary
    cd13306
    Location:170 → 276
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:374 → 474
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    cl25732
    Location:641 → 761
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_005300759.4 → XP_005300816.1  actin filament-associated protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C3IJ47
    Conserved Domains (3) summary
    cd13306
    Location:170 → 276
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:374 → 474
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    pfam00169
    Location:182 → 276
    PH; PH domain
Nucleotide Protein
Heading Accession and Version

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