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ZFR2 zinc finger RNA binding protein 2 [ Chrysemys picta (Painted turtle) ]

Gene ID: 101932290, updated on 8-Mar-2024

Summary

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Gene symbol
ZFR2
Gene description
zinc finger RNA binding protein 2
See related
Ensembl:ENSCPBG00000017098
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
103 current Chrysemys_picta_BioNano-3.0.4 (GCF_000241765.4) Unplaced Scaffold NW_024885822.1 (981917..1061007)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) Unplaced Scaffold NW_007281407.1 (981985..1061007)

NW_024885822.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122172305 Neighboring gene ELAV like RNA binding protein 1 Neighboring gene megakaryocyte-associated tyrosine kinase Neighboring gene retina and anterior neural fold homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger RNA-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysemys picta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Chrysemys_picta_BioNano-3.0.4 Primary Assembly

Genomic

  1. NW_024885822.1 Reference Chrysemys_picta_BioNano-3.0.4 Primary Assembly

    Range
    981917..1061007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042841397.1 → XP_042697331.1  zinc finger RNA-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8C3HV36
    Conserved Domains (3) summary
    smart00451
    Location:513 → 546
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:302 → 324
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02675
    Location:711 → 840
    DZF; DZF domain

  2. XM_042841396.1 → XP_042697330.1  zinc finger RNA-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C3HV36
    Conserved Domains (3) summary
    smart00572
    Location:671 → 924
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00451
    Location:300 → 329
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:302 → 324
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_008171296.3 → XP_008169518.1  zinc finger RNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C3HV36
    Conserved Domains (3) summary
    smart00572
    Location:711 → 964
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00451
    Location:513 → 546
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:302 → 324
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_008171297.3 → XP_008169519.1  zinc finger RNA-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C3HV36
    Related
    ENSCPBP00000023993.1
    Conserved Domains (3) summary
    smart00572
    Location:706 → 959
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00451
    Location:508 → 541
    ZnF_U1; U1-like zinc finger
    sd00020
    Location:297 → 319
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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