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LOC101873288 retinoid X receptor gamma [ Melopsittacus undulatus (budgerigar) ]

Gene ID: 101873288, updated on 8-Mar-2024

Summary

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Gene symbol
LOC101873288
Gene description
retinoid X receptor gamma
See related
Ensembl:ENSMUNG00015000019
Gene type
protein coding
RefSeq status
MODEL
Organism
Melopsittacus undulatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittaculidae; Melopsittacus
Also known as
RXRG
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
104 current bMelUnd1.mat.Z (GCF_012275295.1) 6 NC_047532.1 (29199123..29237185)
103 previous assembly Melopsittacus_undulatus_6.3 (GCF_000238935.1) Unplaced Scaffold NW_004848246.1 (5814993..5853047, complement)

Chromosome 6 - NC_047532.1Genomic Context describing neighboring genes Neighboring gene 14 kDa phosphohistidine phosphatase-like Neighboring gene selectin E Neighboring gene LIM homeobox transcription factor 1 alpha Neighboring gene PBX homeobox 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to retinoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor RXR-gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Melopsittacus undulatus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bMelUnd1.mat.Z

Genomic

  1. NC_047532.1 Reference bMelUnd1.mat.Z

    Range
    29199123..29237185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031047250.1 → XP_030903110.1  retinoic acid receptor RXR-gamma isoform X1

    UniProtKB/TrEMBL
    A0A8C6JV57
    Conserved Domains (3) summary
    cd06943
    Location:252 → 460
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:156 → 232
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:55 → 152
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  2. XM_005147072.1 → XP_005147129.1  retinoic acid receptor RXR-gamma isoform X2

    UniProtKB/TrEMBL
    A0A8C6JV57
    Related
    ENSMUNP00015000061.1, ENSMUNT00015000061.1
    Conserved Domains (3) summary
    cd06943
    Location:237 → 445
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:141 → 217
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:40 → 137
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
Nucleotide Protein
Heading Accession and Version

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