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Rprd2 regulation of nuclear pre-mRNA domain containing 2 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101842195, updated on 8-Mar-2024

Summary

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Gene symbol
Rprd2
Gene description
regulation of nuclear pre-mRNA domain containing 2
See related
EnsemblRapid:ENSMAUG00000019875
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429193.1 (60487918..60545657)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801769.1 (2652747..2688805)

NW_024429193.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121142399 Neighboring gene mitochondrial ribosomal protein S21 Neighboring gene pre-mRNA processing factor 3 Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene uncharacterized LOC121142400 Neighboring gene uncharacterized LOC121142401 Neighboring gene extracellular matrix protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II C-terminal domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, holoenzyme IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: regulation of nuclear pre-mRNA domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429193.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    60487918..60545657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040752214.1 → XP_040608148.1  LOW QUALITY PROTEIN: regulation of nuclear pre-mRNA domain-containing protein 2

    UniProtKB/TrEMBL
    A0A3Q0DE90
    Related
    ENSMAUP00000046825.1, ENSMAUT00000043324.1
    Conserved Domains (3) summary
    PRK03918
    Location:142 → 318
    PRK03918; DNA double-strand break repair ATPase Rad50
    pfam05109
    Location:319 → 645
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cd17001
    Location:23 → 146
    CID_RPRD2; CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 2
Nucleotide Protein
Heading Accession and Version

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