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Xpa XPA, DNA damage recognition and repair factor [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101841820, updated on 8-Mar-2024

Summary

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Gene symbol
Xpa
Gene description
XPA, DNA damage recognition and repair factor
See related
EnsemblRapid:ENSMAUG00000013273
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429184.1 (13339781..13369675)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801690.1 (3997668..4027554)

NW_024429184.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110342579 Neighboring gene uncharacterized LOC121137027 Neighboring gene uncharacterized LOC121138935 Neighboring gene nuclear cap binding protein subunit 1 Neighboring gene thiosulfate sulfurtransferase like domain containing 2 Neighboring gene tropomodulin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UV-damage excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair involved in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair, DNA damage recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleotide-excision repair factor 1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair protein complementing XP-A cells
Names
DNA repair protein complementing XP-A cells homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429184.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    13339781..13369675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021232252.1 → XP_021087911.1  DNA repair protein complementing XP-A cells isoform X1

    UniProtKB/TrEMBL
    A0A3Q0D578
    Related
    ENSMAUP00000013165.2, ENSMAUT00000017074.2
    Conserved Domains (1) summary
    TIGR00598
    Location:142 → 310
    rad14; DNA repair protein

  2. XM_040738813.1 → XP_040594747.1  DNA repair protein complementing XP-A cells isoform X3

    Conserved Domains (1) summary
    TIGR00598
    Location:142 → 222
    rad14; DNA repair protein

  3. XM_005078738.4 → XP_005078795.1  DNA repair protein complementing XP-A cells isoform X2

    UniProtKB/TrEMBL
    A0A1U7QH27
    Related
    ENSMAUP00000013158.1, ENSMAUT00000017067.2
    Conserved Domains (3) summary
    TIGR00598
    Location:99 → 267
    rad14; DNA repair protein
    pfam01286
    Location:98 → 127
    XPA_N; XPA protein N-terminal
    pfam05181
    Location:129 → 180
    XPA_C; XPA protein C-terminus

  4. XM_013119683.3 → XP_012975137.1  DNA repair protein complementing XP-A cells isoform X4

    UniProtKB/TrEMBL
    A0A1U8C6Q2
    Conserved Domains (3) summary
    TIGR00598
    Location:47 → 215
    rad14; DNA repair protein
    pfam01286
    Location:46 → 75
    XPA_N; XPA protein N-terminal
    pfam05181
    Location:77 → 128
    XPA_C; XPA protein C-terminus

RNA

  1. XR_002384685.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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