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Cacnb1 calcium voltage-gated channel auxiliary subunit beta 1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101838500, updated on 8-Mar-2024

Summary

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Gene symbol
Cacnb1
Gene description
calcium voltage-gated channel auxiliary subunit beta 1
See related
EnsemblRapid:ENSMAUG00000015897
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429191.1 (75790089..75813891, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801661.1 (10387440..10411312, complement)

NW_024429191.1Genomic Context describing neighboring genes Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene ADP ribosylation factor like GTPase 5C Neighboring gene ribosomal protein L19 Neighboring gene SH3 and cysteine rich domain 2 Neighboring gene uncharacterized LOC121141487

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuromuscular junction development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
voltage-dependent L-type calcium channel subunit beta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429191.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    75790089..75813891 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005075917.4 → XP_005075974.1  voltage-dependent L-type calcium channel subunit beta-1 isoform X1

    UniProtKB/TrEMBL
    A0A1U7QYX1
    Related
    ENSMAUP00000016933.2, ENSMAUT00000020878.2
    Conserved Domains (4) summary
    smart00072
    Location:283 → 454
    GuKc; Guanylate kinase homologues
    pfam00625
    Location:273 → 453
    Guanylate_kin; Guanylate kinase
    pfam12052
    Location:58 → 99
    VGCC_beta4Aa_N; Voltage gated calcium channel subunit beta domain 4Aa N terminal
    cl17036
    Location:99 → 166
    SH3; Src Homology 3 domain superfamily

  2. XM_005075918.3 → XP_005075975.1  voltage-dependent L-type calcium channel subunit beta-1 isoform X2

    UniProtKB/TrEMBL
    A0A1U7QNM8
    Related
    ENSMAUP00000037039.1, ENSMAUT00000039887.1
    Conserved Domains (4) summary
    cd12041
    Location:99 → 166
    SH3_CACNB1; Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta-1
    smart00072
    Location:238 → 409
    GuKc; Guanylate kinase homologues
    pfam00625
    Location:228 → 408
    Guanylate_kin; Guanylate kinase
    pfam12052
    Location:58 → 99
    VGCC_beta4Aa_N; Voltage gated calcium channel subunit beta domain 4Aa N terminal

  3. XM_021230568.2 → XP_021086227.1  voltage-dependent L-type calcium channel subunit beta-1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0CZE6
    Related
    ENSMAUP00000016951.2, ENSMAUT00000020897.2
    Conserved Domains (3) summary
    cd12041
    Location:52 → 119
    SH3_CACNB1; Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta-1
    pfam12052
    Location:11 → 52
    VGCC_beta4Aa_N; Voltage gated calcium channel subunit beta domain 4Aa N terminal
    cl27059
    Location:226 → 406
    Guanylate_kin; Guanylate kinase

  4. XM_021230569.2 → XP_021086228.1  voltage-dependent L-type calcium channel subunit beta-1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0D067
    Conserved Domains (3) summary
    cd12041
    Location:52 → 119
    SH3_CACNB1; Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta-1
    pfam12052
    Location:11 → 52
    VGCC_beta4Aa_N; Voltage gated calcium channel subunit beta domain 4Aa N terminal
    cl27059
    Location:226 → 406
    Guanylate_kin; Guanylate kinase
Nucleotide Protein
Heading Accession and Version

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