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Cldn9 claudin 9 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101837362, updated on 8-Mar-2024

Summary

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Gene symbol
Cldn9
Gene description
claudin 9
See related
EnsemblRapid:ENSMAUG00000009320
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429191.1 (8539309..8541583, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801720.1 (3354816..3356231)

NW_024429191.1Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 12A Neighboring gene claudin 6 Neighboring gene uncharacterized LOC121141256 Neighboring gene uncharacterized LOC121141108

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429191.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    8539309..8541583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013121643.3 → XP_012977097.1  claudin-9

    See identical proteins and their annotated locations for XP_012977097.1

    UniProtKB/TrEMBL
    A0A1U8CCB5
    Related
    ENSMAUP00000007719.1, ENSMAUT00000011531.2
    Conserved Domains (1) summary
    cl21598
    Location:4 → 163
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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