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Abtb1 ankyrin repeat and BTB domain containing 1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101834361, updated on 8-Mar-2024

Summary

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Gene symbol
Abtb1
Gene description
ankyrin repeat and BTB domain containing 1
See related
EnsemblRapid:ENSMAUG00000008631
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429266.1 (150521843..150528764, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801630.1 (5667804..5674456, complement)

NW_024429266.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene monoglyceride lipase Neighboring gene podocalyxin like 2 Neighboring gene minichromosome maintenance complex component 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and BTB/POZ domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429266.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    150521843..150528764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005071146.4 → XP_005071203.1  ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A1U7QND8
    Related
    ENSMAUP00000052798.1, ENSMAUT00000053410.1
    Conserved Domains (5) summary
    smart00225
    Location:273 → 376
    BTB; Broad-Complex, Tramtrack and Bric a brac
    cd00204
    Location:6 → 76
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00651
    Location:105 → 210
    BTB; BTB/POZ domain
    pfam13857
    Location:21 → 76
    Ank_5; Ankyrin repeats (many copies)
    sd00045
    Location:35 → 60
    ANK; ANK repeat [structural motif]

  2. XM_040737239.1 → XP_040593173.1  ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A1U8BQR4
    Conserved Domains (3) summary
    cd18296
    Location:112 → 235
    BTB2_POZ_ABTB1_BPOZ1; second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cd18497
    Location:234 → 305
    BACK_ABTB1_BPOZ; BACK (BTB and C-terminal Kelch) domain found in ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cl38908
    Location:1 → 72
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  3. XM_040737240.1 → XP_040593174.1  ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A1U8BQR4
    Conserved Domains (3) summary
    cd18296
    Location:112 → 235
    BTB2_POZ_ABTB1_BPOZ1; second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cd18497
    Location:234 → 305
    BACK_ABTB1_BPOZ; BACK (BTB and C-terminal Kelch) domain found in ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cl38908
    Location:1 → 72
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  4. XM_013114242.3 → XP_012969696.1  ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_012969696.1

    UniProtKB/TrEMBL
    A0A1U8BQR4
    Conserved Domains (3) summary
    cd18296
    Location:112 → 235
    BTB2_POZ_ABTB1_BPOZ1; second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cd18497
    Location:234 → 305
    BACK_ABTB1_BPOZ; BACK (BTB and C-terminal Kelch) domain found in ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cl38908
    Location:1 → 72
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
Nucleotide Protein
Heading Accession and Version

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